Computer Science


Lectures: COMPSCI 369 Semester 1, 2015, City Campus


We have three one-hour lectures per week.

Lecture materials will be posted below.

LectureDateTopicLecturerNotes and slides
Full notes for course DW Complete notes
1 Mar 3 Introduction to Computational Science DW Notes and Audio
2 Mar 4 Root finding DW Slides, Notes and Audio
3 Mar 6 Review of linear algebra DW Notes. Sorry, no audio.
4 Mar 10 Systems of linear equations DW Notes and audio
5 Mar 11 Factorising matrices DW Notes and audio
6 Mar 13 Singular value decomposition DW Notes, example and audio
7 Mar 17 More on SVD, condition numbers and PCA DW Example, Notes and audio
8 Mar 18 PCA DW Notes, Population structure, Eigenfaces and audio.
9 Mar 20 Least squares DW Notes, examples and audio
10 Mar 24 QR and pseudoinverse DW Notes and audio
11 Mar 25 Intro to genetics DW Notes, Slides, transcription, translation and audio.
12 Mar 27 Probability primer DW Notes and audio
13 Mar 31 Random variables and distributions DW Notes, html notes, slides, stream and audio
14 Apr 1 More distributions, entropy. DW Notes, html notes, stream and audio
15 Apr 21 Inference and simulation DW Notes, slides, stream and audio
16 Apr 22 Simulation and Random processes DW Notes, slides, stream and audio.
17 Apr 24 Markov chains and homology DW Notes, slides, stream and audio.
18 Apr 28 Mid-term test DW
19 Apr 29 Substitution matrices and global alignment DW Notes, slides, stream and audio
20 May 2 Global, local alignment algorithms DW Notes, slides, stream and audio.
21 May 5 Affine gaps, linear space and multiple sequence alignment DW Notes, slides, stream and audio
22 May 6 Multiple sequence alignment and UPGMA DW Notes, slides, stream and audio
23 May 8 Hidden Markov models and Viterbi algorithm DW Notes, slides, stream and audio
24 May 12 Forward and backward algorithms DW Notes, slides, stream and audio.
25 May 13 Backward algorithm and estimating parameters DW Notes, slides, stream, audio
26 May 15 Examples, sampling state paths, model structure DW Notes, slides, stream and audio
27 May 19 Applications of HMMs DW Notes, slides, stream and audio
28 May 20 Distances and neighbour joining DW Notes, slides, stream and audio
29 May 22 Parsimony DW Notes, slides, stream and audio
30 May 26 Finding the maximum parsimony tree DW Notes, slides, stream and audio.
31 May 27 Parsimony criticisms and likelihood on trees DW Notes and audio
32 May 29 Tree likelihood and Markov processes DW Notes, slides, stream and audio
33 June 2 Substitution process DW Notes, slides, stream and audio.
34 June 3 Topics in phylogenetics DW Language slides, epidemic slides, stream and audio
34 June 5 review DW List of non-examinable sections and audio
Full notes for course DW Complete notes

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