The University of Auckland | The Department of Computer Science


Of interest:

BEAST 2

Bayesian phylogenetic analysis. Beast 2 provides a library for MCMC and evolutionary computing.

DensiTree

DensiTree is a program for qualitative analysis of sets of trees that make it possible to visually inspect the posterior distribution of an MCMC run over a tree. Many features of the posterior distribution are easily visible, such as agreement/disagreement of tree topologies, uncertainty in node heights and relative dominance of particular topologies.

Computational geographic phylogenetics, applied for example to language data, as demonstrated here and here.

My math genealogy in pdf and in svg with links to wikipedia. You might need a bit of zooming in or scrolling to see something interesting. This was generated with a perl script.

Machine learning Publications.


Updated: 2-25-2019 Created by Remco Bouckaert
remco
Remco Bouckaert
Office: Centre for Computational Evolution, Faculty of Science, Room 835, Building 810, Private Bag 92019, 1-11 Short St, Auckland, 1020
Phone: 09-373-7599 ext 85506
Email: r.bouckaert at auckland.ac.nz
Position: Senior Research Fellow