Dr David Welch

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Senior Lecturer


For complete information, see my homepage.

Selected publications and creative works (Research Outputs)

  • Groendyke, C., & Welch, D. (2018). epinet : An R Package to Analyze Epidemics Spread across Contact Networks. Journal of Statistical Software, 83 (11).10.18637/jss.v083.i11
  • Vaughan, T. G., Welch, D., Drummond, A. J., Biggs, P. J., George, T., & French, N. P. (2017). Inferring Ancestral Recombination Graphs from Bacterial Genomic Data. Genetics, 205 (2), 857-870. 10.1534/genetics.116.193425
    URL: http://hdl.handle.net/2292/32525
    Other University of Auckland co-authors: Alexei Drummond
  • Gavryushkina, A., Heath, T. A., Ksepka, D. T., Stadler, T., Welch, D., & Drummond, A. J. (2017). Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins. Systematic Biology, 66 (1), 57-73. 10.1093/sysbio/syw060
    URL: http://hdl.handle.net/2292/32528
    Other University of Auckland co-authors: Alexei Drummond
  • Sainudiin, R., & Welch, D. (2016). The transmission process: A combinatorial stochastic process for the evolution of transmission trees over networks. Journal of Theoretical Biology, 410, 137-170. 10.1016/j.jtbi.2016.07.038
    URL: http://hdl.handle.net/2292/32524
  • Guindon, S., Guo, H., & Welch, D. (2016). Demographic inference under the coalescent in a spatial continuum. Theoretical Population Biology, 111, 43-50. 10.1016/j.tpb.2016.05.002
    URL: http://hdl.handle.net/2292/32526
  • Gavryushkina, A., Welch, D., Stadler, T., & Drummond, A. J. (2014). Bayesian inference of sampled ancestor trees for epidemiology and fossil calibration. PLoS Computational Biology, 10 (12)10.1371/journal.pcbi.1003919
    Other University of Auckland co-authors: Alexei Drummond
  • Vaughan, T. G., Kühnert D, Popinga, A., Welch, D., & Drummond, A. J. (2014). Efficient Bayesian inference under the structured coalescent. Bioinformatics, 30 (16), 2272-2279. 10.1093/bioinformatics/btu201
    Other University of Auckland co-authors: Alexei Drummond
  • Ranjard, L. M., Welch, D., Paturel, M., & Guindon, S. (2014). Modelling competition and dispersal in a statistical phylogeographic framework. Systematic Biology, 63 (5), 743-752. Related URL.

Contact details

Primary office location

Level 4, Room 465
New Zealand

Web links